Speckle-illumination spatial frequency domain imaging with a stereo laparoscope for profile-corrected optical property mapping
Song AA, Chen MT, Bobrow TL, Durr NJ.
arXiv 2024
[Preprint]
In vivo fundus imaging and computational refocusing with a diffuser-based fundus camera
Simmerer C, Morakis M, Gomez-Perez L, Liu A, Durr NJ.
arXiv 2024
[Preprint]
A Deep Learning Approach for Generating Intracranial Pressure Waveforms from Extracranial Signals Routinely Measured in the Intensive Care Unit
Nair SS, Guo A, Boen J, Aggarwal A, Chahal O, Tandon A, Patel M, Sankararaman S, Durr NJ, Azad TD, Pirracchio R, Stevens RD.
Computers in Medicine and Biology In Press 2024
[Journal Link]
GAN Inversion for Data Augmentation to Improve Colonoscopy Lesion Classification
Golhar M, Bobrow TL, Ngamruengphong S, Durr NJ.
IEEE J Biomed Health Inform. 2024
[Journal Link] [Preprint]
Thermal Characterization and Preclinical Validation of an Accessible, Carbon Dioxide-Based Cryotherapy System
Hu Y, Gordon N, Ogg K, Kraitchman DL, Durr NJ, Surtees B.
Bioengineering 11:4 2024
[Journal Link] [Preprint]
Colonoscopy 3D Video Dataset with Paired Depth from 2D-3D Registration
Bobrow TL, Golhar M, Vijayan R, Akshintala VS, Garcia JR, Durr NJ.
Medical Image Analysis 90 2023
[Journal Link]
[Preprint]
Lens free holographic imaging for urinary tract infection screening
McKay GN, Oommen A, Pacheco C, Chen MT, Ray SC, Vidal R, Haeffele BD, Durr NJ.
IEEE Transactions on Biomedical Engineering 70:3 2023
[Cover Article]
[Journal Link]
[Preprint]
Adaptive sparse reconstruction for lensless digital holography via PSF estimation and phase retrieval
Pacheco C, McKay GN, Oommen A, Durr NJ, Vidal R, Haeffele BD.
Optics Express 30:19 2022
[Journal Link]
Structured light for data-driven quantitative tissue imaging
Chen MT
PhD Thesis 2022
[Publisher Link]
Predicting subjective refraction with dynamic retinal image quality analysis
Gil A, Hernández CS, Nam AS, Varadaraj V, Durr NJ, Lim D, Dave SR, Lage E.
Scientific Reports 12:1 2022
[Journal Link]
Deep learning in biomedical optics
Tian L, Hunt B, Bell MAL, Yi J, Smith JT, Ochoa M, Intes X, Durr NJ.
Lasers in Surgery and Medicine 53:6 2021
[Journal Link] [Preprint]
A Deep Learning Bidirectional Temporal Tracking Algorithm for Automated Blood Cell Counting from Non-invasive Capillaroscopy Videos
Huang L, McKay GN, Durr NJ
MICCAI 12908:415-424 2021
[Journal Link] [Preprint]
Speckle illumination SFDI for projector-free optical property mapping
Chen MT, Papadakis M, Durr NJ
Optics Letters 46:3 2021
[Journal Link] [Preprint]
Scattering oblique plane microscopy for in-vivo blood cell imaging
McKay GN, Niemeier RC, Castro-Gonzalez C, Durr NJ
Biomedical Optics Express 12:5 2021
[Journal Link] [Preprint]
Improving colonoscopy lesion classification using semi-supervised deep learning
Golhar M, Bobrow TL, Khoshknab MP, Jit S, Ngamruengphong S, Durr NJ
IEEE Access Vol. 9 2021
[Journal Link]
[Preprint]
EndoSLAM dataset and an unsupervised monocular visual odometry and depth estimation approach for endoscopic videos
Ozyoruk KB, Gokceler GI, Bobrow TL, Coskun G, Incetan K, Almalioglu Y, Mahmood F, Curto E, Perdigoto L, Oliveira M, Sahin H, Araujo H, Alexandrino H, Durr NJ, Gilbert H, Turan M.
Medical Image Analysis 71 2021
[Journal Link] [Preprint]
VR-Caps: A Virtual Environment for Capsule Endoscopy
Incetan K, Celik IO, Obeid A, Gokceler GI, Ozyoruk KB, Almalioglu Y, Chen RJ, Mahmood F, Gilbert H, Durr NJ, Turan M
Medical Image Analysis 70 2021
[Journal Link] [Preprint]
Establishing a Quantitative Endpoint for Transarterial Embolization From Real-Time Pressure Measurements
Gowda PC, Chen VX, Sobral MC, Bobrow TL, Romer TG, Palepu AK, Guo JY, Kim DJ, Tsai AS, Chen S, Weiss CR, Durr NJ
Journal of Medical Devices 15:2 2021
[Journal Link]
A Cartilage Dicing Tool for Rapid Preparation of Rhinoplasty Grafts
Stephanian BA, Karki S, Sharma P, Leo KT, Di Meo MA, Ota M, Patel M, Byrne PJ, Durr NJ
Journal of Medical Devices 14:4 2020
[Journal Link]
Rapid tissue oxygenation mapping from snapshot structured-light images with adversarial deep learning
Chen MT, Durr NJ
Journal of Biomedical Optics 25:11 2020
[Journal Link]
[Editor's Spotlight]
[Cover Article]
[Preprint]
EndoL2H: Deep Super-Resolution for Capsule Endoscopy
Almalioglu Y, Ozyoruk KB, Gokce A, Incetan K, Gokceler GI, Simsek MA, Ararat K, Chen RJ, Durr NJ, Mahmood F, Turan M
IEEE Transactions on Medical Imaging 39:12 2020
[Journal Link]
[Preprint]
Imaging human blood cells in vivo with oblique back-illumination capillaroscopy
McKay GN, Mohan N, Durr NJ
Biomedical Optics Express, 11:5 2020
[Journal Link] [Cover Article] [Preprint]
A diffuser-based computational imaging funduscope
Li Y, McKay GN, Durr NJ*, Tian L*
Optics Express, 28:13, 2020
[Journal Link] [Preprint]
Visualization of blood cell contrast in nailfold capillaries with high-speed reverse lens mobile phone microscopy
McKay GN, Mohan N, Butterworth I, Bourquard A, Sanchez-Ferro A, Castro-Gonzalez C, Durr NJ
Biomedical Optics Express, 11:4 2020
[Journal Link]
Development of a low-cost imaging system for remote mosquito surveillance
Goodwin A, Glancey M, Ford T, Scavo L, Brey J, Heier C, Durr NJ, Acharya S
Biomedical Optics Express 11:5, 2020
[Journal Link] [Editor's Pick]
GANPOP: Generative Adversarial Network Prediction of Optical Properties from Single Snapshot Wide-field Images
Chen MT, Mahmood F, Sweer JA, Durr NJ
IEEE Transactions on Medical Imaging 39:6 2020
[Journal Link]
[Preprint]
Deep Adversarial Training for Multi-Organ Nuclei Segmentation in Histopathology Images
Mahmood F, Borders D, Chen R, McKay GN, Salimian KJ, Baras A, Durr NJ
IEEE Transactions on Medical Imaging 39:11 2020
[Journal Link]
[Preprint]
Curricular Advancement of Biomedical Engineering Undergraduate Design Projects Beyond 1 Year: A Pilot Study
Manbachi A, Logsdon EA, Yazdi Y, Durr NJ
Annals of Biomedical Engineering 48, 2020
[Journal Link]
A Novel Intermediate Attachment to Reduce Contamination in Reusable Core Needle Biopsy Devices
Berges A, Callanan M, Zawicki V, Shi R, Metzger S, Athey T, Ayyappan V, Farrell A, Manbachi A, Harvey S, Durr NJ
Journal of Medical Devices 14:1 2020
[Journal Link]
SLAM Endoscopy enhanced by adversarial depth prediction
Chen MT, Bobrow TL, Athey T, Mahmood F, Durr NJ
KDD Workshop on Applied Data Science for Healthcare 2019
[Preprint]
Validation of an affordable handheld wavefront autorefractor
Rubio M, Hernandez CS, Seco E, Perez-Merino P, Casares I, Dave SR, Lim D, Durr NJ, Lage E
Optometry and Vision Science 96:10 2019
[Journal Link]
Learning to Navigate Endoscopic Capsule Robots
Turan M, Almalioglu Y, Gilbert HB, Mahmood F, Durr NJ, Araujo H, Eren Sari A, Ajay A, Sitti M
IEEE Robotics and Automation Letters 4:3 2019
[Journal Link]
A Device for Preloaded, Trifolded Grafts to Facilitate Descemet Membrane Endothelial Keratoplasty
Chiang E, Barnes K, Cai S, Chen C, Subramanya A, Chaurasia A, Rosen A, Vora P, Durr NJ, Eghrari AO, Allen R.
Journal of Medical Devices 13:4 2019
[Journal Link]
Quality of eyeglass prescriptions from a low-cost wavefront autorefractor evaluated in rural India: results of a 708-participant field study
Durr NJ*, Dave SR*, Lim D, Joseph S, Ravilla TD, Lage E
BMJ Open Ophthalmology 4:1 2019
[Journal Link]
[Preprint]
Automated detection of neutropenia using noninvasive video microscopy of superficial capillaries
Pablo-Trinidad A, Butterworth I, Ledesma-Carbayo MJ, Vettenburg T, Sanchez-Ferro A, Soenksen L, Durr NJ, Arrate MB, Cerrato C, Humala K, Fabra Urdiol M, Del Rio C, Valles B, Chen Y, Hochberg EP, Castro-Gonzalez C, Bourquard A
American Journal of Hematology 94:8 2019
[Journal Link]
DeepLSR: a deep learning approach for laser speckle reduction
Bobrow TL, Mahmood F, Inserni M, Durr NJ
Biomedical Optics Express 10:6 2019
[Journal Link]
[Preprint]
Structured Prediction using cGANs with Fusion Discriminator
Mahmood F, Xu Wenhao, Durr NJ, Johnson JW, Yuille A
ICLR Workshop Paper 2019
[Open Review]
[Preprint]
Wide‐field optical property mapping and structured light imaging of the esophagus with spatial frequency domain imaging
Sweer JA, Chen MT, Salimian K, Battafarano RJ, Durr NJ
Journal of Biophotonics (Early View) 2019
[Journal Link]
Large dynamic range autorefraction with a low-cost diffuser wavefront sensor
McKay GN, Mahmood F, Durr NJ
Biomedical Optics Express 10:4 2019
[Journal Link]
[Preprint]
Multimodal Densenet
Mahmood F, Yang Z, Athey T, Durr NJ
arXiv 2019
[Preprint]
A Review of Options for Localization of Axillary Lymph Nodes in the Treatment of Invasive Breast Cancer
Woods RW, Camp MS, Durr NJ, Harvey SC
Academic Radiology 26:6 2019
[Journal Link]
Comparison of Tri-folded and Scroll-based Graft Viability in Preloaded Descemet Membrane Endothelial Keratoplasty
Barnes K, Chiang E, Chen C, Lohmeier J, Christy J, Chaurasia A, Rosen A, Vora P, Cai S, Subramanya A, Durr N, Allen R, Eghrari AO
Cornea 38:3 2019
[Journal Link]
A quantitative analysis of factors influencing lower lid retraction and involutional ectropion
Chen HC, Polisett TS, Zhu K, Phan BN, Durr NJ, Tian J, Mahoney NR
JPRAS 72 (1) 2019
[Journal Link]
Validation of a low-cost, carbon dioxide-based cryoablation system for percutaneous tumor ablation
Surtees B, Young S, Hu Y, Wang G, McChesney E, Kuroki G, Acree P, Thomas S, Blair T, Rastogi S, Kraitchman DL, Weiss C, Sukumar S, Harvey SC, Durr NJ.
PLoS One 14:7 2019
[Journal Link]
[Preprint]
Rethinking Monocular Depth Estimation with Adversarial Training
Chen R, Mahmood F, Yuille A, Durr NJ
arXiv 2019
[Preprint]
Single-Element Needle-Based Ultrasound Imaging of the Spine: An In Vivo Feasibility Study
Zhang H, Kim Y, Moghekar A, Durr NJ, Boctor E
MICCAI POCUS Workshop pp 82-89 2018
[Journal Link]
Viability of Descemet Membrane Endothelial Keratoplasty Grafts Folded in the Eye Bank
Lohmeier J, Christy J, Chiang E, Barnes K, Cai S, Chen C, Subramanya A, Chaurasia A, Rosen A, Vora P, Durr NJ, Allen R, Eghrari AO
Cornea 37 (11) 2018
[Journal Link]
Deep Learning and Conditional Random Fields-based Depth Estimation and Topographical Reconstruction from Conventional Endoscopy
Mahmood F, Durr NJ
Medical Image Analysis 48 2018
[Journal Link]
[Preprint]
Unsupervised Reverse Domain Adaptation for Synthetic Medical Images via Adversarial Training
Mahmood F, Chen R, Durr NJ
IEEE Transactions on Medical Imaging 37:12 2018
[Journal Link]
[Preprint]
Deep Learning with Cinematic Rendering: Fine-Tuning Deep Neural Networks Using Photorealistic Medical Images
Mahmood F, Chen R, Sudarsky S, Yu D, Durr NJ
Physics in Medicine and Biology 63 (18), 2018
[Journal Link]
[Preprint]
Toward dynamic lumbar punctures guidance based on single element synthetic tracked aperture ultrasound imaging
Zhang H, Kim Y, Lin M, Paredes M, Kannan K, Moghekar A, Durr NJ, Boctor E
Journal of Medical Imaging 5(2) 2018.
[Journal Link]
Topographical reconstructions from monocular optical colonoscopy images via deep learning
Mahmood F, Durr NJ
IEEE ISBI 216-219, 2018
[Journal Link]
Starting a Medical Technology Venture as a Young Academic Innovator or Student Entrepreneur
Manbachi A, Kreamer-Tonin K, Walch P, Gamo NJ, Khoshakhlagh P, Zhang YS, Montague C, Acharya S, Logsdon EA, Allen RH, Durr NJ, Luciano MG, Theodore N, Brem H, Yazdi Y
Annals of Biomedical Engineering 2018
[Journal Link]
System for generating synthetic aperture ultrasound images during needle placement
Patel N, Scalabrin E, Kannan K, Gupta K, Chan L, Paredes M, Lin M, Roychoudhury S, Shah S, Moghekar A, Boctor EM, Durr N, Kim Y, Zhang H
PCT Application PCT/US2017/030660 2017
Annular beam shaping in multiphoton microscopy to reduce out-of-focus background
Borglin J, Wang D, Durr NJ, Hanstorp D, Ben-Yakar A, Ericson MB
International Journal of Spectroscopy 2017
https://doi.org/10.1155/2017/7560141
Apparatus And Methods For Tunable-Lens-Based Refractive Examination
Dave SR, Lim D, Durr NJ
US Provisional Application US 62/350,018 2016.
PCT Application PCT/US2017/037257 2017
Toward dynamic lumbar punctures guidance based on single element synthetic tracked aperture ultrasound imaging
Zhang HK, Lin M, Kim Y, Patel N, Moghekar A, Durr NJ, Boctor EM
Proc SPIE Medical Imaging 10135 2017.
DOI: 10.1117/12.2256040
Clinical validation of a novel wavefront autorefractor in a base hospital and vision center in rural India
Durr NJ, Dave SR, Lim D, Mahadevan R, Ravilla S, Joseph S, Ravilla TD, Lage E.
ARVO Annual Meeting 2017.
Evaluating ex-vivo ocular treatment depth from a low-cost, reusable, CO2-based cryotherapy system
Stone DU, Eberhart C, Vizcaino A, Surtees B, Lee S, Durr NJ.
ARVO Annual Meeting 2017.
A team leader model for biomedical engineering design team project-definition training and scalable clinical observation
Logsdon EA, Allen R, Durr NJ, Nguyen H
ASEE Annual Conference 2017.
The Feasibility and Optimization of a Percutaneous Carbon Dioxide-based Cryoprobe.
Surtees B, Lee S, Lee B, Trakru S, Rex M, Kang Y, Jois N, Hui A, Harvey S, Durr NJ
BMES Annual Meeting 2016.
Design and clinical evaluation of a handheld wavefront autorefractor
Durr NJ, Dave SR, Vera-Diaz FA, Lim D, Dorronsoro C, Marcos S, Thorn F, Lage E.
Optometry and Vision Science 92:12 2015.
DOI: 10.1097/OPX.0000000000000732
Tripling the maximum imaging depth with third-harmonic generation microscopy
Yildrim M, Durr NJ, Ben-Yakar A.
Journal of Biomedical Optics 20:9 2015.
DOI: 10.1117/1.JBO.20.9.096013
Imaging Colonic Surface Topography With Photometric Stereo Endoscopy
Durr NJ, Parot V, Traverso G, Puricelli WP, Vakoc BJ, Nishioka NS, Gonzalez G.
DDW 2014 Gastrointestinal Endoscopy 79:5 2014.
DOI: 10.1016/j.gie.2014.02.676
Feature space optimization for virtual chromoendoscopy augmented by topography
Gonzalez G, Parot V, Lo W, Vakoc BJ, Durr NJ
Medical Image Computing and Computer Assisted Intervention Society 17:641-649 2014.
DOI: 10.1007/978-3-319-10404-1_80
From Unseen to Seen: Tackling the Global Burden of Uncorrected Refractive Errors
Durr NJ, Dave SR, Lage E Marcos S, Thorn F, Lim D.
Annual Review of Biomedical Engineering 16 2014.
DOI: 10.1146/annurev-bioeng-071813-105216
Apparatus and method of determining an eye prescription
Durr NJ, Lage E, Dave S
WO Application PCT/US2014/045305 2014.
Google Patent Link
US Patent 9,854,965 2018.
US Patent Link
Three dimensional imaging techniques for improved colonoscopy
Durr NJ, Gonzalez G, Parot V
Expert Review of Medical Devices 11:2 2014
DOI: 10.1586/17434440.2013.868303
A Novel Pilot Study Using Spatial Frequency Domain Imaging to Assess Oxygenation of Perforator Flaps During Reconstructive Breast Surgery
Nguyen JT, Lin SJ, Tobias AM, Gioux S, Mazhar A, Cuccia DK, Ashitate Y, Stockdale A, Oketoun R, Durr NJ, Moffitt LA, Durkin AJ, Tromberg BJ, Frangioni JV, Lee BT.
Annals of Plastic Surgery 71:3 2013.
DOI: 10.1097/SAP.0b013e31828b02fb
Photometric Stereo Endoscopy
Parot V, Lim D, Gonzalez G, Traverso CG, Nishioka NS, Vakoc B, Durr NJ
Journal of Biomedical Optics 18:7 2013.
DOI: 10.1117/1.JBO.18.7.076017
Apparatus and method of determining an eye prescription
Durr NJ, Lage E, Dave S, Diaz CD, Celestino SM, Lim D
WO Application PCT/US2014/045261 2014.
Google Patent Link
Photometric stereo endoscopy
Durr NJ, Parot VJ, Lim D, Gonzalez G.
WO Application PCT/US2014/026881
Google Patent Link
Multiphoton Luminescence from Gold Nanoparticles as a Potential Diagnostic Tools for Early Cancer Detection
Durr NJ, Ericson MB, Ben-Yakar A.
Biosensors and biodetection technologies for cancer detection, diagnostics and research CRC Press 2011
DOI: 10.1201/b12138-23
First-in-human pilot study of a spatial frequency domain oxygenation imaging system
Gioux S, Mazhar A, Lee BT, Lin SJ, Tobias AM, Cuccia DJ, Stockdale A, Oketokoun R, Ashitate Y, Kelly E, Weinmann M, Durr NJ, Moffitt LA, Durkin AJ, Tromberg BJ, Frangioni JV.
Journal of Biomedical Optics 16:8 2011.
DOI: 10.1117/1.3614566
Fast-updating and non-repeating Lissajous image reconstruction method for capturing increased dynamic information
Hoy CL, Durr NJ, Ben-Yakar A.
Applied Optics 50:16 2011.
DOI: 10.1364/AO.50.002376
Apparatus and method of determining an eye prescription
Durr NJ, Lage E, Dave S, Diaz CD, Celestino SM, Lim D
US Provisional Application US 61/972,058 2013.
Apparatus and method of determining an eye prescription
Durr NJ, Lage E, Dave S
US Provisional Application US 61/972,191 2011.
Photometric stereo endoscopy
Durr NJ, Parot VJ, Lim D, Gonzalez G.
US Provisional Application 61/780,190 2011.
Google Patent Link
Maximum Imaging Depth of Two-Photon Autofluorescence Microscopy in Epithelial Tissues
Durr NJ, Weisspfennig CT, Holfeld BA, Ben-Yakar A.
Journal of Biomedical Optics 16:2 2011.
DOI: 10.1117/1.3548646
Nonlinear imaging with endogenous fluorescence contrast and plasmonic contrast agents
Durr NJ
Ph.D. Dissertation 2010.
The University of Texas, Austin
Method for evaluating extracellular water concentration in tissue
Baker CR, Schmitt J, Campbell S, Durr N, Hoarau C, Ostrowski R, Debreczeny MP
US Patent 7,657,292
Google Patent Link
Thermal analysis of gold nanorods heated with femtosecond laser pulses
Ekici O, Harrison RK, Durr NJ, Eversole DS, Lee M, Ben-Yakar A.
J Phys D-Appl Phys 41:18 185501 2008.
DOI: 10.1088/0022-3727/41/18/185501
Femtosecond laser nanoaxotomy lab-on-a-chip for in vivo nerve regeneration studies
Gou SX, Bourgeois F, Chokshi T, Durr NJ, Hilliard MA, Chronis N, Ben-Yakar A.
Nature Methods 5:6 531-533 2008.
DOI: 10.1038/nmeth.1203
Miniaturized Probe for Femtosecond Laser Microsurgery and Two-Photon Imaging
Hoy CL, Durr NJ, Chen P, Piyawattanametha W, Ra H, Solgaard O, Ben-Yakar A.
Optics Express 16:13 2008.
DOI: 10.1364/OE.16.009996
Two-photon luminescence imaging of cancer cells using molecularly targeted gold nanorods
Durr NJ, Larson T, Smith DK, Korgel BA, Sokolov K, Ben-Yakar A.
Nano Letters 7:4 941-945, 2007.
DOI: 10.1021/nl062962v
Method and apparatus for spectroscopic tissue analyte measurement
Baker CR, Durr NJ, Mogri M, Hoarau C, Ostrowski R, Debreczeny MP
US Application US11716482
Google Patent Link
A novel method to determine lean body water using localized skin biopsies: correlation between lean skin water and lean body water in an overhydration model
Campbell SE, Ostrowski R, Hoarau C, Durr N, Debreczeny MP.
American Journal of Physiology 291 2006.
DOI: 10.1152/ajpregu.00164.2006